Marco Colombo

Experimental area · proceed at your own risk!

Research papers

A. Barton, J. Massey, D. Plant, K. Hyrich, A.W. Morgan, A.G. Wilson, A. Spiliopoulou, M. Colombo, P. McKeigue, J. Isaacs, H. Cordell, C. Pitzalis Genome-wide association study of response to tumour necrosis factor inhibitor therapy in rheumatoid arthritis Accepted in The Pharmacogenomics Journal, 2018
M. Colombo, H.C. Looker, B. Farran, F. Agakov, M.J. Brosnan, P. Welsh, N. Sattar, S.J. Livingstone, P.N. Durrington, D.J. Betteridge, P.M. McKeigue, and H.M. Colhoun Apolipoprotein CIII and N-Terminal Prohormone B-type Natriuretic Peptide as independent predictors for cardiovascular disease in type 2 diabetes Atherosclerosis, 274, 182-190, 2018
J.C. Taylor, T. Bongartz, J. Massey, B. Mifsud, A. Spiliopoulou, I.C. Scott, J. Wang, M. Morgan, D. Plant, M. Colombo, P. Orchard, S. Twigg, I.B. McInnes, D. Porter, J.E. Freeston, J.L. Nam, H.J. Cordell, J.D. Isaacs, J.L. Strathdee, D. Arnett, M.J.H. de Hair, P.P. Tak, S. Aslibekyan, R.F. van Vollenhoven, L. Padyukov, S.L. Bridges, C. Pitzalis, A.P. Cope, S.M.M. Verstappen, P. Emery, M.R. Barnes, F. Agakov, P. McKeigue, T. Mushiroda, M. Kubo, R. Weinshilboum, A. Barton, A.W. Morgan, J.H. Barrett, on behalf of the MATURA and PAMERA Consortia Genome-wide association study of response to methotrexate in early rheumatoid arthritis patients Accepted in The Pharmacogenomics Journal, 2018
M.L. Bermingham, M. Colombo, S.J. McGurnaghan, L.A.K. Blackbourn, F. Vučković, M. Pučić Baković, I. Trbojević-Akmačić, G. Lauc, F. Agakov, A. Agakova, C. Hayward, L. Klarić, C.N.A. Palmer, J.R. Petrie, J. Chalmers, A. Collier, F. Green, R.S. Lindsay, S. Macrury, J.A. McKnight, A.W. Patrick, S. Thekkepat, O. Gornik, P.M. McKeigue, H.M. Colhoun, on behalf of the SDRN Type 1 Bioresource Investigators N-glycan profile and kidney disease in type 1 diabetes Diabetes Care, 41 (1), 79-87, 2018
N. Pirastu, P.K. Joshi, P.S. de Vries, M.C. Cornelis, P.M. McKeigue, N. Keum, N. Franceschini, M. Colombo, E.L. Giovannucci, A. Spiliopoulou, L. Franke, K.E. North, P. Kraft, A.C. Morrison, T. Esku, J.F. Wilson GWAS for male-pattern baldness identifies 71 susceptibility loci explaining 38% of the risk Nature Communications, 8, 1584, 2017
J.D. Quell, W. Römisch-Margl, M. Colombo, J. Krumsiek, A.M. Evans, R. Mohney, V. Salomaa, U. de Faire, L.C. Groop, F. Agakov, H.C. Looker, P. McKeigue, H.M. Colhoun, G. Kastenmüller Automated pathway and reaction prediction facilitates in silico identification of unknown metabolites in human cohort studies Journal of Chromatography B, 1071, 58-67, 2017
A. Spiliopoulou, M. Colombo, P. Orchard, F. Agakov, P. McKeigue GeneImp: fast imputation to large reference panels using genotype likelihoods from ultralow coverage sequencing Genetics, 206 (1), 91-104, 2017
H.C. Looker, M. Colombo, S. Hess, M.J. Brosnan, B. Farran, R.N. Dalton, M.C. Wong, C. Turner, C.N. Palmer, E. Nogoceke, L. Groop, V. Salomaa, D.B. Dunger, F. Agakov, P.M. McKeigue and H.M. Colhoun, on behalf of the SUMMIT Investigators Biomarkers of rapid chronic kidney disease progression in type 2 diabetes Kidney International, 88, 888-896, 2015
H.C. Looker, M. Colombo, F. Agakov, T. Zeller, L. Groop, B. Thorand, C.N. Palmer, A. Hamsten, U. de Faire, E. Nogoceke, S.J. Livingstone, V. Salomaa, K. Leander, N. Barbarini, R. Bellazzi, N. van Zuydam, P.M. McKeigue and H.M. Colhoun, on behalf of the SUMMIT Investigators Protein biomarkers for the prediction of cardiovascular disease in type 2 diabetes Diabetologia, 58 (6), 1363-1371, 2015
P.M. McKeigue, M. Colombo, F. Agakov, I. Datta, A. Levin, D. Favro, R.R. Burke, C. Gray-Montgomery, M.C. Iannuzzi and B.A. Rybicki Extending admixture mapping to nuclear pedigrees: application to sarcoidosis Genetic Epidemiology, 37 (3), 256-266, 2013
M. Colombo and A. Grothey A decomposition-based crash-start method for stochastic programming Computational Optimization and Applications, 55 (2), 311-340, 2013
B.A. Rybicki, A.M. Levin, P.M. McKeigue, I. Datta, C. Gray-McGuire, M. Colombo, D. Reich, R.R. Burke and M.C. Iannuzzi A genome-wide admixture scan for ancestry-linked genes predisposing to sarcoidosis in African-Americans Genes and Immunity, 12 (2), 67-77, 2011
M. Colombo, J. Gondzio and A. Grothey A warm-start approach for large-scale stochastic linear programs Mathematical Programming, 127 (2), 371-397, 2011
M. Colombo, A. Grothey, J. Hogg, K. Woodsend and J. Gondzio A structure-conveying modelling language for mathematical and stochastic programming Mathematical Programming Computation, 1 (4), 223-247, 2009
A. Grothey, J. Hogg, K. Woodsend, M. Colombo and J. Gondzio A structure-conveying parallelisable modelling language for mathematical programming "Parallel Scientific Computing and Optimization", R. Ciegis, D. Henty, B. Kågström, J. Zilinskas (eds.), Springer Optimization and its Applications, 27, 147-158, 2009
M. Colombo and J. Gondzio Further development of multiple centrality correctors for interior point methods Computational Optimization and Applications, 41 (3), 277-305, 2008

Technical reports and Dissertations

June 2009, revised December 2010 M. Colombo and A. Grothey A multi-step interior point warm-start approach for large-scale stochastic linear programming Technical Report ERGO 09-007
May 2007, revised October 2007 M. Colombo Advances in interior point methods for large-scale linear programming Thesis presented for the Degree of PhD in Optimization, School of Mathematics, University of Edinburgh Successfully defended on 6 September 2007, examiners Danny Ralph and Ken McKinnon
September 2003 M. Colombo A branch-and-cut approach to solve the Hamiltonian Cycle Problem Dissertation presented for the Degree of MSc in Operational Research, School of Mathematics, University of Edinburgh MSc in OR awarded with distinction
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